rs49815120 SNP Detail

Summary

• ID
  rs49815120
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119817669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG CTAGAATCGC AGGCTGCTCC
  A
  GTCCGGCTTT TACATGGGTT CTGGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147339475	ENSMUSSNP4265087	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49815120					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119817669 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68146	predicted gene, 68146			952 bp upstream
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398437	regulatory region 398437			874 bp downstream
Rr598690	regulatory region 598690			1999 bp distal
Rr598691	regulatory region 598691			963 bp distal
Rr598692	regulatory region 598692			462 bp distal
Rr598693	regulatory region 598693			1659 bp proximal
Rr598694	regulatory region 598694			1776 bp proximal