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rs49811390 SNP Detail
Summary
  • ID
    rs49811390
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:163707090 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ACAGAGAAAG GCCAATCACC GACTTCTGGG GACCAGAGAA
    CCCCCAGGAG TATGGGGAGG GGCCACGGGG CAAATGGGTA TAGGGTGGCC AGCATACGTA
    R
    CCATGTCTGG GTAGGTACCA CGTGAGGTCT CAGCTGGGTG AGCCTCTTTT AGTCTTTACT
    GCCTTCCCTT TCCTTAGCTC ACTGTTTCTT CCCTCAGTC                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
ss148214265 ENSMUSSNP3148116 ENSEMBL ENSEMBL_Sanger f SNP G A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
rs49811390 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:163707090 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rims4 regulating synaptic membrane exocytosis 4 Intron
Rr569511 regulatory region 569511 1750 bp distal
Rr569512 regulatory region 569512 926 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory