rs49811390 SNP Detail

Summary

• ID
  rs49811390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163707090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGAGAAAG GCCAATCACC GACTTCTGGG GACCAGAGAA
  CCCCCAGGAG TATGGGGAGG GGCCACGGGG CAAATGGGTA TAGGGTGGCC AGCATACGTA
  R
  CCATGTCTGG GTAGGTACCA CGTGAGGTCT CAGCTGGGTG AGCCTCTTTT AGTCTTTACT
  GCCTTCCCTT TCCTTAGCTC ACTGTTTCTT CCCTCAGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148214265	ENSMUSSNP3148116	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49811390					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163707090 () rs orientation: forward

Symbol	Name	Function Class
Rims4	regulating synaptic membrane exocytosis 4	Intron
Rr569511	regulatory region 569511	1750 bp distal
Rr569512	regulatory region 569512	926 bp proximal