rs49811298 SNP Detail

Summary

• ID
  rs49811298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51356587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACATACATAC
  ACACAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  GGGGAGAGAG GGAGAGAGAG AGAGAGAGAA ATAGTGAGAA AGACAGAGAA TGTGATAAGG
  GAGAGTGAAA AGTAAAATAA ATGTTTAAAA TATAAAGGTG TTTAACCCCA GGATATGTGT
  Y
  CTAAAGGATG TGGCTTTTCT CTGAAGGAAC TTGAGAGATA TGAGTGTTTA CGCAGTCATC
  TGCTCTTAGG AAATTACAGA GGTTTCCCTT CTCATAATAG CTATGATGTA GAAAACCCAT
  GACAGGAAGG ACCTGCCCTC AAGATGACAA CTGCATATCT GATGTTACAG GACAGACATT
  TGTCAGACTG GCCCAAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52289268	NES15305038	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49811298					SNP	C	C	C	C	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289268	NES15305038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51356587 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	121 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	170 bp upstream
Rr431273	regulatory region 431273	within coordinates
Tssr93232	transcription start site region 93232	236 bp downstream
Tssr93233	transcription start site region 93233	322 bp upstream
Tssr93234	transcription start site region 93234	348 bp upstream
Tssr93235	transcription start site region 93235	641 bp upstream
Tssr93236	transcription start site region 93236	1127 bp upstream
Tssr93237	transcription start site region 93237	1166 bp upstream
Tssr93238	transcription start site region 93238	1190 bp upstream
Tssr93239	transcription start site region 93239	1215 bp upstream
Tssr93240	transcription start site region 93240	1232 bp upstream
Tssr93241	transcription start site region 93241	1254 bp upstream
Tssr93242	transcription start site region 93242	1294 bp upstream
Tssr97553	transcription start site region 97553	48 bp upstream