rs49811034 SNP Detail

Summary

• ID
  rs49811034
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141987312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG CATGGATTAT TAATCATTTG
  W
  CTATGGTACT GCAGCTGTAG CCATG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss61087893	NES16611933	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	T	T	A	A		A		A
ss136011754	ENSMUSSNP1196654	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					A
ss320999943	CHEV_3_141944515	CHEVERUD	SCREENING_POP	f	SNP									A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs49811034					SNP	T	T	T	A	T	T	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087893	NES16611933	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141987312 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398079	regulatory region 398079	1241 bp upstream
Rr586407	regulatory region 586407	22 bp distal
Rr586408	regulatory region 586408	1327 bp proximal
Rr586409	regulatory region 586409	1526 bp proximal
Rr586410	regulatory region 586410	1620 bp proximal