rs49808657 SNP Detail

Summary

• ID
  rs49808657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147952755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT CCCAGCCCTG CCACCCTACA
  R
  GCCCCTGGAG ACTTGGGTTT CGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147985352	ENSMUSSNP6973276	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321415388	CHEV_4_147242407	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49808657					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147952755 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15282	CpG island 15282			31 bp proximal
Fv1	Friend virus susceptibility 1			681 bp upstream
Miip	migration and invasion inhibitory protein			Intron
				Noncoding-Transcript-Variant
Rr398850	regulatory region 398850			294 bp upstream
Rr604509	regulatory region 604509			1130 bp distal
Rr604510	regulatory region 604510			within coordinates
Rr604511	regulatory region 604511			213 bp distal
Rr604512	regulatory region 604512			175 bp proximal
Tssr40232	transcription start site region 40232			489 bp upstream
Tssr40233	transcription start site region 40233			532 bp upstream
Tssr44551	transcription start site region 44551			171 bp downstream
Tssr44552	transcription start site region 44552			310 bp downstream
Tssr44553	transcription start site region 44553			333 bp downstream