rs49808553 SNP Detail

Summary

• ID
  rs49808553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108177866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGACTTCT GATTCCATCC
  ATCTGAAGTG TAAGTTGAGG GCTTGCATTT CTAGCAATTC CCTGGGTAGC AGGCAGTGCT
  ACTGCCGTTG CTGCTGCTGA TCTGAAGGGC AGCTCTGTGA GAACCCTGAG TATTCCTCAA
  AAGTCAAGCA GTCCTCCCTA ATTGCAATTG AATGATCTTA AGCAATTTCC TTGAATTTTA
  R
  ATTTTAAGTT TTTCATCTAC CAAAAAGGGT AATGAAACCC CTCTCTTAGG ATGGTGATCT
  GCAGGGTGAT CTATACTGAG GCTACTGTAA GACCTCAATA AATGCTTTCT ATTGCTGGCA
  AGATGGCTCA GCACCAAGAA TAAAGACACC ACGGAAGCAT CATGGCCTGA GTTAGATTCC
  TGGAACCCAC ATGAGAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133497286	ENSMUSSNP6606489	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49808553					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108177866 () rs orientation: forward

Symbol	Name	Function Class
Rr636050	regulatory region 636050	1718 bp distal