rs49808133 SNP Detail

Summary

• ID
  rs49808133
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:56942934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCACACATG ACATACTTCT CAGTGAAATG GCACAGTGAG
  GTGCTCAGTG TGTTAAAGTG CATGTGTGCA TGCAGGCACA CCTACTCATG TGAGACAAAG
  A
  CTGACTTTGA GATGTCTTCC TTACTCATGT CTCCATCTTT TTTCTTCCTT TCTTTCTTTT
  TCCCCCTTCT CCTTTTCTGA GGCAAGTCTC TCAACCTGG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146382898	ENSMUSSNP1485923	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321134017	CHEV_4_56955806	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49808133					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56942934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr592624	regulatory region 592624			102 bp proximal
Rr592625	regulatory region 592625			1176 bp proximal
Tmem245	transmembrane protein 245			Intron
				Noncoding-Transcript-Variant