rs49806844 SNP Detail

Summary

• ID
  rs49806844
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141295025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTTTGT GTTATTTTTT
  AAATCAACAA TAGAACATCA AATAACAGCA TATAACTAGA TGTGCGGGAA GAGATGTTGA
  ATTTAATCTA TTTTTGGTTG TGTTTTTCTT TAACTTATGA AGAAACTGTT ATGTCCTAGA
  AGTGGATGGT GGATGTGATA CATAGGGTAA GAGAGGGACT TTGGGAATCT CTTCTCTCTT
  K
  AGCTATATGC ATGACCCTTT GATTCTCATA CCATCCTACA AAAATAAGCT GGAAAAAAAA
  ATTCCTCTGA AGTTTAAAGA TGGTACTCAA GGGTAAAAAG GCTTGTCTAC CTGGAGCTTG
  AGAAGCCTAT TGAGAAAACT CACCTAGAAA GGAGCTTCAT AATTGTGGCT GATGCAGGGT
  AATTAATGTG GACATGGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136005327	ENSMUSSNP5733319	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
ss320993573	CHEV_3_141252228	CHEVERUD	SCREENING_POP	f	SNP			G		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49806844					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141295025 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			168 bp proximal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant