rs49805133 SNP Detail

Summary

• ID
  rs49805133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158525655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGGGGG CACCTAACAA
  AAAAGGAATG CAAGCTTGCT TGCAGCATTT CAAAAGCTGC TCACAGAGTT CCAAAGAAGG
  AATGACACAG TAGCTTACTA ACAGCTAAGC AACGTGAAGA CTACACAGGA GTCTTACCTT
  AGAAGGTACT TGGTGCAATG CCGGAAGCAT GTCACGTGCT CAACAGTGTG GTGTTCTGGC
  R
  CCCTCTTCAA ACCTATTCAT AATTTCCTAA ATGTCATCCC GTGACAACAT GGTTGGGCTG
  AAGAAATCAT GTTCCAATTT CACATCATGT ATCTTTTTTT ATTTTAAATA TGGCAAAGGT
  CTTGTTCAAA TTTTTATATT GAACTTCCTT GAAGACGTTT TACTATGTTG CACAAAGCAT
  CTTTTAAAAC AATAAATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60333201	NES15837274	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49805133					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60333201	NES15837274	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158525655 () rs orientation: forward

Symbol	Name	Function Class
Gm53639	predicted gene, 53639	1378 bp upstream
Rr421480	regulatory region 421480	421 bp distal
Rr421481	regulatory region 421481	1194 bp proximal