rs49805065 SNP Detail

Summary

• ID
  rs49805065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107111647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGAACTG AGGAAGAAGG
  AAAGAATTGG TGCAAAACTA AGAATGTGTT TCTTTAAAAG TCACAGCTTC ATCCTACAAT
  GTCCACCAAC TTAAAGCAAC TTGATATCTC CCAAACATTA CCTGGATCCC CTGGTGGCTG
  TCCTGTGCTT CTGACACCTC AACATTTGCT GGGTTTGGAG GACTTCCAAG CTCACAGACT
  R
  GCAGGGCCAG TTCCTCTTTA GCTGTTACTA GAGGTCAGAG TCAGACCTCT GCCACAGAGA
  CTTCACCACA CCACTGCTCA CAACACAGTT CTTGCATTCC CAGAGTGAGC AAGAAATGAC
  CGAAGAGAAT CTCAGGCTCT TTGCAGCCCA ACTTCAGAAT CGGTGCCTTG TTGAGCCACC
  TCTTCTATTT GCTGCCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135583279	ENSMUSSNP7081813	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320864587	CHEV_3_107007249	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49805065					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107111647 () rs orientation: forward

Symbol	Name	Function Class
Rr582930	regulatory region 582930	1624 bp proximal
Rr582931	regulatory region 582931	1848 bp proximal