rs49804882 SNP Detail

Summary

• ID
  rs49804882
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147517335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCTCTGAGAC AGGGAGACCT TTAATTCCAG GACAATCTGT
  GCTGTTTAGG GAAGTCTATT AAAAAAAAAA AAAAAAACAA AGCAAGGCAA AGTTGATCAA
  C
  AAAAGTGCAA TTATATTACA TATATTAAAT AGGTGACGTA TAAAAGAAAA CTGGGTGGGT
  GTATATTGTC TGATATAGTC TTCTCCTTGG CATGAGTGCC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147960200	ENSMUSSNP1657118	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49804882					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147517335 () rs orientation: forward

Symbol	Name	Function Class
Rr398817	regulatory region 398817	1588 bp downstream
Rr398818	regulatory region 398818	1023 bp upstream
Rr398819	regulatory region 398819	1422 bp upstream
Rr604487	regulatory region 604487	323 bp distal