rs49803793 SNP Detail

Summary

• ID
  rs49803793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19527644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAATCT TCAAGTTAAA
  AGTAAATTTT CCAAGCAAGG AATAGCTTAT GAGGTCATCA CTAAGAAATC ACATCCTGGG
  GTTGGGAATT GCTGATCGGT GGTAGCATTC TTGCATAGCA TGCCAGTAGC CCCACCCAAG
  AGAATTTACT TTATAAAATA ACTCAAGTCA TTTATTAATT GGAGATGGAT CCTAGTAAGA
  Y
  GTCATGTTAT ACTCCACCTA GATGCCAATC ATTCCTCTCA GCTGAATCAC AAAATGCCCG
  TATTATTTAG TATATATTTA TTAAATGTTC AAATACATGA ATACTGTAAC TGGTTCATAA
  AAAGGGAAGA AATATTTAAA AGTGTAATTA CATGCTAGGC CAAAAGCTGA TTTATACATG
  AAAATCTTTT AAGAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52626607	NES15515240	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49803793					SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626607	NES15515240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19527644 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1084 bp upstream
Trgj4	T cell receptor gamma joining 4	1262 bp downstream
Tssr118539	transcription start site region 118539	1776 bp downstream
Tssr118540	transcription start site region 118540	1703 bp downstream
Tssr118541	transcription start site region 118541	1647 bp downstream
Tssr118542	transcription start site region 118542	1569 bp downstream
Tssr118543	transcription start site region 118543	1533 bp downstream
Tssr118544	transcription start site region 118544	1513 bp downstream
Tssr118545	transcription start site region 118545	1487 bp downstream
Tssr118546	transcription start site region 118546	1405 bp downstream
Tssr118547	transcription start site region 118547	1332 bp downstream
Tssr118548	transcription start site region 118548	1313 bp downstream
Tssr118549	transcription start site region 118549	735 bp downstream
Tssr118550	transcription start site region 118550	15 bp downstream
Tssr118551	transcription start site region 118551	726 bp upstream
Tssr121588	transcription start site region 121588	1765 bp upstream
Tssr121589	transcription start site region 121589	208 bp upstream
Tssr121590	transcription start site region 121590	850 bp downstream
Tssr121591	transcription start site region 121591	1715 bp downstream