rs49802925 SNP Detail

Summary

• ID
  rs49802925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147510488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGATAGTGA CAACGTTTAA GGATGTGGAA TTCAAAGCTG
  AGGTTCAGTG AGGACTGTTA GATGGTCCAA TTTGGAATGT TAATAGTTTG TGTTACTTTC
  Y
  CCTCTAGGAA TAAGCAATAT CAGAATGTGA ATGTCCTAAT GCTTTTAGGA AAACTTGTTT
  GTGTAAAGAT GTTTCATGCT TTAATCACCA GAGGGTGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss147958956	ENSMUSSNP3165653	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49802925					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147510488 () rs orientation: forward

Symbol	Name	Function Class
Rr398813	regulatory region 398813	1830 bp upstream
Rr604485	regulatory region 604485	within coordinates
Rr604486	regulatory region 604486	81 bp proximal