rs49802892 SNP Detail

Summary

• ID
  rs49802892
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149221857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAC GCATGCGCAC ACGCGGAGGC
  T
  GGCTAGGGAC TCGGGGCCTT TCCCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148028539	ENSMUSSNP3747711	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321425006	CHEV_4_148511509	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs49802892					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149221857 () rs orientation: forward

Symbol	Name	Function Class
Cenps	centromere protein S	Intron
Rr398863	regulatory region 398863	105 bp upstream
Rr604839	regulatory region 604839	within coordinates
Rr604840	regulatory region 604840	159 bp proximal
Rr604841	regulatory region 604841	213 bp proximal
Tssr44623	transcription start site region 44623	136 bp downstream
Tssr44624	transcription start site region 44624	199 bp downstream