rs49801864 SNP Detail

Summary

• ID
  rs49801864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148023132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAG AAAACATTCC TGGGCAGTCA
  Y
  CAGAGTACAA ATTAAAAGAG GGATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147987444	ENSMUSSNP1153982	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321415859	CHEV_4_147312784	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49801864					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148023132 () rs orientation: forward

Symbol	Name	Function Class
Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	1908 bp upstream
Rr377387	regulatory region 377387	661 bp downstream
Rr604526	regulatory region 604526	1418 bp distal
Rr604527	regulatory region 604527	853 bp distal
Rr604528	regulatory region 604528	within coordinates
Rr604529	regulatory region 604529	1730 bp proximal
Tssr40234	transcription start site region 40234	1823 bp downstream
Tssr44566	transcription start site region 44566	1942 bp upstream
Tssr44567	transcription start site region 44567	1907 bp upstream