rs49800344 SNP Detail

Summary

• ID
  rs49800344
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37433062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGATATGAC CAGCCTGAAG ACCCGTTTCC CGTCTCATTC
  AGCCAGGCAT TTCTTCCCGT GTTGAGCACT CTCTGGCACC ATCCAAATCA TATGCGCGTT
  T
  CCTAACACTC GAGTAGAACT GTGCCAATCT CCAATATTGA CTCTTCAAGT GCTTTCAGTT
  CAATGTATTC CTTTCAAAGA GCCTGCAGTG TCCTCACAG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134804176	ENSMUSSNP596473	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320709686	CHEV_3_37277835	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49800344					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37433062 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fgf2	fibroblast growth factor 2			Intron
				Noncoding-Transcript-Variant
Gm43439	predicted gene 43439			within coordinates
Rr575470	regulatory region 575470			within coordinates
Rr575471	regulatory region 575471			481 bp proximal
Rr575472	regulatory region 575472			1352 bp proximal