rs49798565 SNP Detail

Summary

• ID
  rs49798565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126456623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTACCTTGTC AAGAGCCTGA ATTGTCCTGT GCTTAGCGGG
  ACTTAGGATG CCTGTGCCAT TTATTGTATT TGGATTGAAA ATGAAGAATA TAAAGATTTT
  Y
  AGATTTTTTA AAATCTTGTA TACTGCAGTA TCATATATGA TAAGACGATT GCAAAAGAAA
  GAGAAATAGC TTAAGCCGAT GTGTCACTAT CAGTAAAACG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135838362	ENSMUSSNP532662	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49798565					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126456623 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			within coordinates
Rr397996	regulatory region 397996			759 bp downstream
Rr584671	regulatory region 584671			1382 bp distal
Rr584672	regulatory region 584672			606 bp distal
Rr584673	regulatory region 584673			281 bp proximal