rs49798562 SNP Detail

Summary

• ID
  rs49798562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109335894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTAGCCA ATGTTACTTA
  ACAAGCAAAC AAACAATTCT GCCTCAAAAA AAGTCTATAT TCAATCAAAC AAAAAAATTT
  TTTTTTTGAA ATAGCATCTC ACTATATAGC TCTGGCTGTC CTGGAACTCC CTACGTAGAC
  CAGACTAGCC TCAAACTCAG AGGTCTACCT GTCTGTCTCT AAAATGCTAG GACTAAAGGT
  R
  TGTGCCACCA CACCCTTTCT CCAACCAATG TGTTTCAAAA CAGAACCTTG AGCTGGGCAC
  AGAGATACAA ATCTATTATT CCAGCACTTG GAAGGTAGAA GTAGGAAGAT CAGGAGTTAG
  AAATCATTTT CCCATACAGA ATGAATTCCA GGCCAGTCTG GACTACATGA GAGCCCTTCC
  TCAATATCTC CTCCCAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147197998	ENSMUSSNP5970290	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49798562					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109335894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14574	CpG island 14574	1679 bp distal
Rr597332	regulatory region 597332	1286 bp distal
Rr597333	regulatory region 597333	1847 bp distal
Tssr42769	transcription start site region 42769	1970 bp upstream