rs49797877 SNP Detail

Summary

• ID
  rs49797877
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116688060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGA AGCCTTGGGT GCTGCTGTGC
  M
  GATGCACACC TGTTTTGTTC AGACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss133578833	ENSMUSSNP5528154	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss321918779	CHEV_6_116661117	CHEVERUD	SCREENING_POP	f	SNP			C		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49797877					SNP	C	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116688060 () rs orientation: forward

Symbol	Name	Function Class
Rr637245	regulatory region 637245	1186 bp proximal
Rr637246	regulatory region 637246	1463 bp proximal
Tmem72	transmembrane protein 72	Intron