rs49797396 SNP Detail

Summary

• ID
  rs49797396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:142440293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATTAGT GGGGAGGTTG
  TTTAAGGTCA TATAGTTATG GGACAAGAGT TGGAGGCAAG GTCCATTGGT ATACCCTTTC
  TTCATGCTGT CTCCACGTGA GGCACGGAAG CCTTTTGAAG TCCTCAACTG TCAAGAGTAG
  GTCTCTGCCT TAGGAATATG GCTGAGCCAG TATGCAAAGA CAAACCCATC TCATCTCTGG
  R
  TGAGGACAGA GCTGGGACTA GGGCAAACAG AGGGAGGCCT CAGGTACTAA AACCCTCGAC
  GGTTAAGATA AATAGATTTG AATGCAATGT TCTAAAAAAT AAAATAAAAT TTTAAGTATG
  TACTCTGTAC CCTACATTGC CTAGTTTCCT CTAAGCACAC TCAGCCCTCA GGTACAAGAT
  AAATACATTC TGGACATCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147736773	ENSMUSSNP159193	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320531949	CHEV_2_142424109	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49797396					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:142440293 () rs orientation: forward

Symbol	Name	Function Class
Rr566224	regulatory region 566224	739 bp proximal