rs49795788 SNP Detail

Summary

• ID
  rs49795788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32241775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTT CAGGGCTGGG TCATGGTCTT
  Y
  GTTACACCCA GATCCCATTC TGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60382930	NES15880807	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C	C	T	C	T		C	T	T	C		C
ss134746303	ENSMUSSNP6925178	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss320697186	CHEV_3_32086548	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49795788					SNP	T	T	C	C	T	T	C	C	T	C	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60382930	NES15880807	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32241775 () rs orientation: forward

Symbol	Name	Function Class
Kcnmb2	potassium large conductance calcium-activated channel, subfamily M, beta member 2	Intron
Rr574931	regulatory region 574931	981 bp proximal
Rr574932	regulatory region 574932	1095 bp proximal
Rr574933	regulatory region 574933	1531 bp proximal