rs49795711 SNP Detail

Summary

• ID
  rs49795711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60551279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACGTAAT CAAAATGTAT
  GCCCCCCCCC CCCACCTCTT GGGGAACGTG TTATAGTAAT TCCTGATTGC ATGCCTTAGT
  TATTAGCATT ATTTACCTTT CTGCATACCA CAGTAGAAGC AAATTCAGAT GCAAGGATTC
  AAAGCAGAAG AGGGGTTTAA CCCTTAAGAA CTAGACACAA AGTCAATGGC TCTTTAGGAG
  Y
  CTGAAGATGG GTTTGAAACC TCAGATGAAA AATCCCTGAC ATCACACGAT GCCCCAGTCA
  GCACATCTAG CTGTAAGTTT GCTTTAACGT ATGGTGTCTG GGGAAAATAC TGAGACATCG
  CAAAAATATC ATTATATTTC AAATTTAAAC TTTTGAGACT GCACTTCATG CTGCGAACAC
  TAGAGGGCAG AAGTCAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146651372	ENSMUSSNP2883959	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49795711					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60551279 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	Intron
Rr557685	regulatory region 557685	within coordinates
Rr557686	regulatory region 557686	173 bp proximal
Rr557687	regulatory region 557687	1429 bp proximal
Rr557688	regulatory region 557688	1698 bp proximal
Tssr24212	transcription start site region 24212	1596 bp downstream
Tssr24213	transcription start site region 24213	1701 bp downstream
Tssr24214	transcription start site region 24214	1735 bp downstream