rs49794364 SNP Detail

Summary

• ID
  rs49794364
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13151879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGCTAAA GGTTTGGCTC
  AAAGGTCAAG GCTTTTCCTT GCAGTCATGG TTTGATCTCT ATAACTGATT TAAAATAGTT
  ATAATTTCAT TATTCCTTAA ACTCATAGTG TTTCAAATTG GACTCTCCTG ATGATTAGAT
  TGACAGTTAG CCAGGGAAAC TGCACTAACT TTTGACAGGA ATAAAGGGAC AAAATCTAGG
  R
  ACATGCCTTT AATAGCAGTA TACCTGAAGG TGAGGCAGGA GCCTCACCTG GAGTTCAAAG
  CCAGCTTGTG GACTACATTG TAAAAACCCT GTCTCAAATA GATAAGCTAA AGTGGATAGA
  AGGAGCACAT AGGCAAGTAC TCTGCCTTAA AGAGATTCTT TTTAGGATGT CATTTATATG
  GCTTGGTTAT ATTCTTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss133003210	ENSMUSSNP2185187	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		G
ss321747175	CHEV_6_13101880	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49794364					SNP	A	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13151879 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	320 bp proximal
Rr626557	regulatory region 626557	565 bp proximal