rs49794281 SNP Detail

Summary

• ID
  rs49794281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145123649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTAGTT ATTAGTCTCA
  GGGAGACCGC ACAGTGAGGA AGTTATTGCA ACACAAGTGT CGCTGCAGGA GAATGTCCTT
  TATTTCTCAT CCAACTTACT TTCTTTAAAA AAAAAAAATA GCCTGAGTTG AATAAAGATA
  GGTGGCAGCT CTCTGTCGAT ACTCACATTA TCGCCTTTGA TTGATTACCC AGAGGCTCAT
  Y
  GTTGGCCGCG CTGCCAGGCA AGTTTGGGAC AGCATGAGTG ACCCATTCCT TTCTCGTGTT
  TCCCATAGCA CAAGTGTGAC TACCGGCATC TGCTCAGAGG ACATTCCAGG CATAGCCTCC
  TGATCATTGC CAGAACTGCC TGGCAATGCT AACGCCTCTC TCTGAGCTTT TATTTTATGA
  CTGCACATTC GCTCCTAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61093856	NES16613577	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49794281					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61093856	NES16613577	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145123649 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
D530037P16Rik	RIKEN cDNA D530037P16 gene			1432 bp upstream
Rr586779	regulatory region 586779			20 bp proximal
Rr586780	regulatory region 586780			140 bp proximal