rs49793818 SNP Detail

Summary

• ID
  rs49793818
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155967308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCCAC TCTTCTCTCT
  CCTTCTTTCT CTCCTATCTA GTGATGGGGG TGAAATCAGG AAGATAAAGG GTAGGAAAAA
  GAAGAACCCA CAAAGTTGCA AAGACTAGTT ACATCCATGT GCTTTGCCTA TGGAAGACTC
  CATGTTACAA TGTACAGGAA TCTCACAGGC TCTGGGAGAC ATTCCTCTTA CCCATTCCTC
  W
  TACCAGTCTT TGTGTGGCAG ACATCCCTGG AGAAAGACAA CACACAGGTC TGATTCAGTA
  TTCTGAGTTG CTCAGCATAA TCAAAGAAAG AGGGCCACTC AAGAATGAAT TTAGGACTTG
  CTAGCCACAG AGAGAGCCAG CCTTTGGCCT AAATGTTCAA ACCACCACAC AAAAGCATAT
  TTATTGATTG TTAAACAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321443591	CHEV_4_155256960	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49793818					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155967308 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints11	integrator complex subunit 11			Intron
				Noncoding-Transcript-Variant
Rr606604	regulatory region 606604			1401 bp distal
Rr606605	regulatory region 606605			802 bp proximal