rs49793559 SNP Detail

Summary

• ID
  rs49793559
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95042391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAATACGG GGTAACGGTG AGTCTTCCAG AATTGAGATA
  GTCCCGAGAA AGTGGGTGGC CCGCTAAGAT GCCCCCTCTC ACATTATTTA AATTCTATTA
  G
  GGTCTGTTTT TTTTCTTCCT TATTTTGCTT TCACATCTCA GCAGAGCACT GTTGGGACAG
  ATCTGCCCAA CTATCCCAGT GGGAGGAGCA ACTCCTGTA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135510089	ENSMUSSNP5634820	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49793559					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95042391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13498	CpG island 13498	1025 bp distal
D3Umi10	DNA segment, Chr 3, University of Michigan 10	841 bp distal
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	Intron
Rr367480	regulatory region 367480	991 bp downstream
Rr580823	regulatory region 580823	982 bp distal
Rr580824	regulatory region 580824	within coordinates
Rr580825	regulatory region 580825	670 bp proximal
Rr580826	regulatory region 580826	1269 bp proximal
Scnm1	sodium channel modifier 1	1106 bp upstream
Tssr34419	transcription start site region 34419	1167 bp upstream
Tssr34420	transcription start site region 34420	1092 bp upstream
Tssr34421	transcription start site region 34421	1063 bp upstream