rs49791529 SNP Detail

Summary

• ID
  rs49791529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40459108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAACAAGG CCTGGTCTCC
  TTCACATGCA ACATATGAAC CTTCTCCACA AGAGATTCTG TGTAAGATCG TTCTGCCAGG
  AATCTGTACT GTCTCTAGCT GCTTTGCTGG TCCATGGATA AAGACCACCG CATCCCTGGG
  CAACCAAGCA GGGGTGAGGC ACGTGCAAGC AGGGTGACGC CTGTGTCCCT TTCTTCTGAC
  R
  CTCCCCAGGC CCTGAGCTGA GACTGTCACT GGGACAGAAA GGGTCAAATC ACGGAGACTG
  CAGTCAAAGT TTGGTGAGAT TCCTTCCTGG ATCTGTCATC TCGTCATGGT CTAAATGACT
  TAAAGCACCG AAACGTTTAT ACATCAATAA TGTTTGACAT TTTTCTCTCC ATCTTAATGA
  ACTTTCAGTA AGTTATGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60393721	NES15889400	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49791529					SNP	A	A	A	A	A	A	G	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393721	NES15889400	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40459108 () rs orientation: forward

Symbol	Name	Function Class
Rr575811	regulatory region 575811	549 bp proximal