rs49791416 SNP Detail

Summary

• ID
  rs49791416
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22034004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGTGCT TGGCCATCCC
  CAAACCTCTG TCCAAAAAGG TAAAGATTGG GCTTTGTGAG GCAGAAAGGA AGTGAGAGAA
  AACAAAACAA ATGTAGCTCA AGCTGAAAGT GAAAAGCCCT TGGATAGATT GGTATTTTCT
  TTTCTGCAGG GCATCCTGTC AACTGTCTTC CCCCGCACCC CACTCCTCAA TAAGGTCCGG
  T
  TTTTGCTTGT AGGAAAATGT TGTTATCTAC CACCCCACGG AACCCGCATA AGTATTGTTG
  CTTTATTTTA TTTTTATCTG TCCTCATCAG ACTGACACCC CCGACCCCCC CCTCACCCTG
  TCAACACCCC AACTCTGGGG GACCTTAGGT GTTGAAACCC TGCAGCCCTC CGAAGCCACG
  TCCCACTGGA TCCCTTTCAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss146960095	ENSMUSSNP6381236	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs49791416					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22034004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	294 bp proximal
Cpgi1374	CpG island 1374	1082 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	504 bp upstream
Raet1e	retinoic acid early transcript 1E	437 bp upstream
Rr384270	regulatory region 384270	1228 bp upstream
Rr428833	regulatory region 428833	within coordinates
Rr428834	regulatory region 428834	492 bp proximal
Tssr92677	transcription start site region 92677	290 bp upstream
Tssr92678	transcription start site region 92678	364 bp upstream
Tssr92679	transcription start site region 92679	416 bp upstream
Tssr92680	transcription start site region 92680	461 bp upstream