rs49788975 SNP Detail

Summary

• ID
  rs49788975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135708992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGTTCA ATTCCCAGCA
  ACTACATGGT GGCTCTCAAC CGTCTGTAAT GGGATCCCAT GCCCTCTTCT GGTGTGTCTG
  AAGACAGCAA CTGCAACAGT GTACTCATAT ATAAACAAAT AAATCTTTAA AAAAAAGAAA
  AAAGAAACAA ACACTAATGA GGAAGCAAAG AAAGGGGAAC ACAACATTGT GGACAGGAAT
  R
  CAAACTAGAG GTGTCATTAT GGGAAGTTCT TTAAAAACCA ACCAACTAAA CAAAACCCAA
  GCAAACAGGA AACAGAAATA CCGTCTGATC TAACAATTCC CTTACTGAGT AAATACCCAG
  AGGAAAGGGG CTGAAGCCGG GAGCCAGGGA GAGACGGGCG CACGCCTACT GCCATCTGCT
  GCTTATTATG GTGCCATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147555287	ENSMUSSNP3948330	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49788975					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135708992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69125	predicted gene, 69125			within coordinates
Pithd1	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr602230	regulatory region 602230			124 bp distal
Rr602231	regulatory region 602231			166 bp proximal