rs49787999 SNP Detail

Summary

• ID
  rs49787999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37841616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAAAGTC ACTGTTAGCA GGAGCTATAG CAAATAGTGG
  TATCATTTCT CGGGAGACAT GGGTAATAGA GCCGAGACCC GATCCTGTCA CCCTGAGACC
  Y
  GATTCTGTCA CTCAGAGATC TGATCTTGTT ACCCTGAGAC CTGTTTCTGT CATCCCGAGA
  CTGCCCCTCT CACCCTGAGA TCTGTCCTGT CACCTTGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134813977	ENSMUSSNP447641	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320712797	CHEV_3_37686389	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49787999					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37841616 () rs orientation: forward

Symbol	Name	Function Class
Rr575564	regulatory region 575564	346 bp distal
Rr575565	regulatory region 575565	884 bp proximal
Rr575566	regulatory region 575566	1855 bp proximal