rs49784733 SNP Detail

Summary

• ID
  rs49784733
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41363231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA TAATCCTATT AAGGCAAACC
  W
  CGAGAAGTTG CTGGATTTAG CAAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60600932	NES16305474	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		A	T	A		T
ss144675523	ENSMUSSNP5363722	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					T
ss322633651	CHEV_8_41995548	CHEVERUD	SCREENING_POP	f	SNP								T				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs49784733					SNP	T	T	T	T	T	T	T	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600932	NES16305474	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41363231 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77032	transcription start site region 77032	1774 bp downstream
Tssr77033	transcription start site region 77033	1515 bp downstream
Tssr77034	transcription start site region 77034	1452 bp downstream
Tssr77035	transcription start site region 77035	518 bp downstream
Tssr77036	transcription start site region 77036	621 bp upstream
Tssr77037	transcription start site region 77037	816 bp upstream