rs49784346 SNP Detail

Summary

• ID
  rs49784346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:15639896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATACACCT GGAGATTATT
  AATTCTGGGA GAGACCTCAA AGCCGCAGGT CACATTTCAC TTTGGTCTAG TAAGAAAACC
  AAATAAAAGA AGGATTTAAA AATGTAGGCA ATTTTTATTT TAATATTTTC GCCTGCAAAC
  TATTCCTGCT TCCTTTGGCA AAGAAATAAA AATTTTCAGT CTAGGGAGCT TCAATGTAGC
  R
  CATGAATATT ACATTTAAAA AAAAAGAGAG AGAACTCGAT TTAAACTGTT TCAAACAGGG
  AGGGGATTGG AGGGAGCTGA GAGAAGAGGA CATGCCAGGC AATGTGCTCT GGCTCCCTGG
  AGTGTACCTG CACCAATGGC CACCATGCCA AGTTGGTAAG CACAAATCCA GGCCTACAAT
  GACTCACCAC CCTACCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60865396	NES15989604	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49784346					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60865396	NES15989604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15639896 () rs orientation: forward

Symbol	Name	Function Class
Gm36352	predicted gene, 36352	140 bp upstream
Gm44039	predicted gene, 44039	1528 bp downstream
Rr626670	regulatory region 626670	676 bp distal
Rr626671	regulatory region 626671	within coordinates