rs49783993 SNP Detail

Summary

• ID
  rs49783993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAAAACT CATGAGACTT
  ATTATTGACG GGTTATGAGT TAGAAATAAA GAATGGCTAT ATTTATAGCT TCCTAGCACT
  GATAACAAAG TGCTAGTACT CTTTTATCTT CCATATCTTA CGCTTCCAGA GGTTGGGGTG
  AGCCCAGAAT TTGGGGGAAC CAACATACAG GCAGTAGCAG GGTATCTGCT CTTTGGAGGC
  Y
  GAAGGAGAGA AGTCATTTCC TCACCCTTTC CTCGTGGAGA CTGACGACAC TCCTTGGCTT
  GTGAATATTC TCACAGCAAG ACTTCCTGGC TGTGCCTCTC CTGCCTTCCT TTTACCTACA
  GAGACCCTTA GAATATTAAA TTTGTGCCTA ACTAGTAGCA CAGGATAATC TTCCGGGCAC
  AAAATACTTG ATCACATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146246444	ENSMUSSNP3905195	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321100061	CHEV_4_44087594	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49783993					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1655 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1955 bp distal
Rr591150	regulatory region 591150	1458 bp distal
Rr591151	regulatory region 591151	1725 bp distal
Rr591152	regulatory region 591152	536 bp distal
Tssr41484	transcription start site region 41484	1991 bp upstream
Tssr41485	transcription start site region 41485	1701 bp upstream