rs49781841 SNP Detail

Summary

• ID
  rs49781841
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117148127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GGATTCTTTT GTGATTTCCA
  K
  GGCTTAGGAT AGGGTGAGTG GGAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60932522	NES16191103	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	T	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49781841					SNP	G	G	G	G	G	G	T	G	T	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932522	NES16191103	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117148127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17888	CpG island 17888	1625 bp distal
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	543 bp distal
Rr637288	regulatory region 637288	1265 bp proximal
Tssr58391	transcription start site region 58391	1161 bp downstream
Tssr58392	transcription start site region 58392	310 bp upstream
Tssr58393	transcription start site region 58393	322 bp upstream
Tssr58394	transcription start site region 58394	342 bp upstream