rs49781738 SNP Detail

Summary

• ID
  rs49781738
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114383306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATTCAATACC TGCTATACCT TTCATTTTTT ATCATATTCT
  TTAAAATTTA TAAAGTATTA GGACAAGAAA AATGAGTATT ATAAAATTTA TTTCATATAA
  T
  ACAATCAATT GAACAGTCTT TTGTACATGC TTGTCTACAA TAATACTGAA AATACATATT
  TTCTCAATAT AAATTTTAAA TAATGTCAAA TATATTAACT G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134493240	ENSMUSSNP3877253	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss134499129	ENSMUSSNP6715527	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49781738					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114383306 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597591	regulatory region 597591			1607 bp distal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant