rs49781157 SNP Detail

Summary

• ID
  rs49781157
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125197433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTCACAAC AGAAAGCCCC ATCACGAACT TTTATTAACC
  CACTTGATAC AGTGACATAG CTGCAAAGTG AAATCTTATT CTCGGATTAT GTAGGAAATA
  W
  TCAAACTGTC CAGTGAACGA TTATCCAAAT CCTCAAGGGG CACCTAATCA ATCAATCAGT
  GTTGTGTGAG AGGAAGGCTG CCGGCTGCTG AATTAGCTTC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61078009	NES16589254	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49781157					SNP	A	T	A	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078009	NES16589254	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125197433 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	292 bp upstream
Rr584608	regulatory region 584608	within coordinates
Rr584609	regulatory region 584609	303 bp proximal
Tssr31558	transcription start site region 31558	288 bp upstream
Tssr31559	transcription start site region 31559	541 bp upstream