rs49778264 SNP Detail

Summary

• ID
  rs49778264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140689948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA GGTGTGAGCC ACCACCACCA
  Y
  CCGACTTGTG CATCCCTTTG CATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147720448	ENSMUSSNP1962673	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49778264					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140689948 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15201	CpG island 15201			553 bp distal
Gm34431	predicted gene, 34431			1195 bp upstream
Gm68270	predicted gene, 68270			1387 bp upstream
Rr367768	regulatory region 367768			459 bp downstream
Rr603592	regulatory region 603592			1424 bp distal
Rr603593	regulatory region 603593			1442 bp distal
Rr603594	regulatory region 603594			907 bp distal
Rr603595	regulatory region 603595			1329 bp distal
Rr603596	regulatory region 603596			94 bp proximal
Rr603597	regulatory region 603597			767 bp proximal
Rr603598	regulatory region 603598			1091 bp proximal
Rr603599	regulatory region 603599			1374 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)			Intron
				Noncoding-Transcript-Variant
Tssr40003	transcription start site region 40003			1344 bp downstream
Tssr40004	transcription start site region 40004			1325 bp downstream
Tssr40005	transcription start site region 40005			1235 bp downstream
Tssr40006	transcription start site region 40006			1222 bp downstream
Tssr40007	transcription start site region 40007			557 bp upstream