rs49777405 SNP Detail

Summary

• ID
  rs49777405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41572162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATATTTAT GAAGTACTTA
  ACATTTTTTT CAGAGTGGTT TCCTTAAATG CCTTTGAGCA CAGAACACTG GAACAGTAGG
  TCAAATAAGA GGAACTGACC TACATCCCAC AAAAACAATT TCCAAGATCA CAGCATTGGG
  ACTTGACAGA ACTGGGCCTC GTTCTAACTT TTAGTTTTTG AGAATTTGCA GTGGGGAACC
  R
  TCTTAGACAA TCAGCAGTTA AATGCACCTT CATGTTGGGA GCAGGAAGCC TGATAAAACA
  GTGTACCCAT CCAGGTAGAT TATGATTAGA GGCAGTGGTG CCATATCATT ATGACTCAAA
  TTTAAAATTT GTAAGCGTCT TTTCTAACAT GAATTATCCA ATAGTTGTCT CAACCCTTGT
  TTATTTCTCC TTGTCCTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397318	NES15898368	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49777405					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397318	NES15898368	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41572162 () rs orientation: forward

Symbol	Name	Function Class
Jade1	jade family PHD finger 1	863 bp downstream
Rr575994	regulatory region 575994	443 bp distal
Rr575995	regulatory region 575995	752 bp proximal