rs49777359 SNP Detail

Summary

• ID
  rs49777359
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48408244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGT
  GTGTGTCTGT GTGTGTCTGT GTGTGTCTGT GTGTCTGTGT GTGTGTCTGT GTGTGCGTGC
  TCATGCGCTG ATTGACAGGT GTGTAATGTA GCATGTGCAG TCTCTCCTCC CCACCCCTAG
  ACTCCTTATG TAGAATAGGT AGGCCTTGAA CTCACAGAGA ACCGCCTGCC TCTGCCTCGG
  S
  TGTGCCCGTG CTGCTTGTTT TTTAACATAA GCCGCACAAT AATGGATTGA GACGGCAGTA
  CAGCAGGGGC ACCCTAACAA TAGAGCAAGG GAACGCTACA AGCAGTGCGC TCGCATTCCC
  TCTCAAAATC GCCTGTGCAC TGTTTTCAAA CCTTTCATCT GAAGAAAGCC CTTTTTGACA
  GATCTGAATT TTTGGCATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146277630	ENSMUSSNP2322405	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49777359					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48408244 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Invs	inversin			Intron
				Noncoding-Transcript-Variant
Rr591973	regulatory region 591973			884 bp distal
Rr591974	regulatory region 591974			732 bp distal
Rr591975	regulatory region 591975			305 bp distal