rs49776538 SNP Detail

Summary

• ID
  rs49776538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102378011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTCTAG TTTCTGCCTT
  GCACTCTTTC AGATATCCTA TTTTGTGCCA TTTTTCTTCT CTTTAATACC ATTCTATTTT
  GTTTTGTTTT TCAAGACAGG GTTTCTCGGA GCAGTCTTGG ATGTCCTAGA ACTTGCTCTG
  TAGATCAGGA TGACTTCAAC TCAAGAGATC TGCCTGCCTC CTGAGTGCTG AGATCAAAGT
  Y
  GTGTGCCACC ACCAACTGGC TTCAATGCCA TTCTTGATGC TTGCTTATAC AAATGTCTCC
  TGGTTGGAGA AGTTGACAAT GAGGGAGAAA GCTCATACTG AGTTTTCTAA AGGTCAGTCT
  CAGGACAGAC AATGATGATG CCTAATATTT ATTTACAGCA GCCGTGTGTG CTAGGCGTGC
  GGTATCTTTG CATGAATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147115117	ENSMUSSNP3503537	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320438704	CHEV_2_102387823	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49776538					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102378011 () rs orientation: forward

Symbol	Name	Function Class
Rr561703	regulatory region 561703	1965 bp proximal