rs49776444 SNP Detail

Summary

• ID
  rs49776444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104946479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCATGGTG GGAAAGTGTC
  CAACACTGCA ACACAAGAGA AATTCATTGT CCATGTGTCC ATACTATGAG GAACGTGGCA
  AGTCCCACTG GTGTCACCTA GGGCCACAGC TGCTAAAGCC TGATAACTGT AGGCTGCTAT
  TGACAAGGGG AAACCACCTA GTCCTCGGGC TGAAGCTGAA TCTATACATG AAGTACAGGG
  Y
  TCTGACTTCC CTTCTGCAAG GGGTAATTAG TGAGCGTGAG AGCTACTGAA AATTTTTTTT
  CATTTTCTTT TAAGACAGAG ACTAGAATGA CCTTAAACTC AAATGGTGAT CCTCCTGCCT
  TAGTGTCTGA TATACAGAAA TCTCTTAAGA TGTCCAATGC CATTTCAACT TGTCAAGGGC
  ACTAGGCACA AACTTTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60431136	NES15934550	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49776444					SNP	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431136	NES15934550	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104946479 () rs orientation: forward

Symbol	Name	Function Class
Cttnbp2nl	CTTNBP2 N-terminal like	Intron
Rr582653	regulatory region 582653	879 bp proximal
Rr582654	regulatory region 582654	1883 bp proximal