rs49772168 SNP Detail

Summary

• ID
  rs49772168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:149840072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAACTCAC ATAGCATGCC
  ACAGGAAAGT GCCAACACAA TGCCTGACCT AGAAGAGATG TTTAATATGC AGTTGAATTT
  CCATACCTCC TGTCATCTTT TAGAACGTAA CAGCTTAGTA TGTGCGGGGT GTGTGGCTTC
  ATTGGTAGTG TGTTTGCTTG GTATGCTTGA GTAGCATGCA CAAAGCCCTG GGTTGAATTT
  Y
  CCCAGCACTG TATAACCCAC ACAAACTGGT GCATATCCAT AATTCCAGCA CTCTGCAGGT
  AGAGGCAAGA GAATCACTAT GATTCCAAGA CGAGAACTAC TCAGTGGGTT CCAGGCTAGC
  CTAGGCTACA AAGTGCAGCC TTACCAGAAG AACAAGAGGA GGAAGAGGAA GAGAAGGCTG
  CTGCTGCTGA GCCAGGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss134502952	ENSMUSSNP3522893	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49772168					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149840072 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
DXMit153	DNA segment, Chr X, Massachusetts Institute of Technology 153			1075 bp distal
Fgd1	FYVE, RhoGEF and PH domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr694365	regulatory region 694365			1166 bp distal