rs49771488 SNP Detail

Summary

• ID
  rs49771488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76284537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGACCCTA CCCTGGTTGT
  TTCATAAGTT CATAGGGTGA TTGACTTACA TCCCATCTGG TTTAGAATCT CAACCCCATA
  TATTCCCCCC CCCTTTTAAA TTCCTGTCTG TGTTCTCTAT GCCAGTGCAC TCTCTGTCCC
  AGGGTCCCCT TAGGCACTGC CTTTGACCCC TCTCTGGCCA AAGTCTCTGC CACAAAGAGT
  Y
  TCCTGAAACC CTCAGGGAGC TCCTGTCTGA TGGTCTCCTA GGTATCCAGC CACACTGCCT
  TTTTACTTTG AGGGTTTCAA GGAAGGACAA GAGTGTCCTA GAGGCAGTGG CAAGTGACCA
  GAATGGTGTG GTGTAGGTCT AGGGGCAATG AGGAGTCCTC CAGGAGTCTT CTACACTATC
  TCCCCGGGGT AAGCGGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61289923	NES16900669	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49771488					SNP	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61289923	NES16900669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76284537 () rs orientation: forward

Symbol	Name	Function Class
2610028H24Rik	RIKEN cDNA 2610028H24 gene	378 bp upstream
Rr384948	regulatory region 384948	260 bp downstream
Rr434267	regulatory region 434267	1964 bp distal
Rr434268	regulatory region 434268	299 bp distal
Rr434269	regulatory region 434269	152 bp proximal
Tssr94175	transcription start site region 94175	1317 bp downstream
Tssr94176	transcription start site region 94176	354 bp upstream
Tssr94177	transcription start site region 94177	371 bp upstream
Tssr94178	transcription start site region 94178	392 bp upstream
Tssr94179	transcription start site region 94179	418 bp upstream