rs49771266 SNP Detail

Summary

• ID
  rs49771266
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122212861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACTTCT GAAGCTGCTC
  TCGATCATAG CGTTCATCTC AGCAACAGAG AAGCAAAGCA GGACACTGTG TAAATAAAAA
  TACCTGGGCT GTTCCCTGTG GAGCCTTCTG TCTTATCCAT CTGATCCGAA GGTGTTCCTT
  ACATAGTTTC TATACATTTC CTTTATCGGC TGCATGAATT GCGTAGAGGA GCTCTTAATG
  W
  CAATTACGTT AACAAGCGGG TTTCCTTTGG CGTTAGTGCT TCGTGTATTT AATTAAGGAA
  TCTTTACAGC CCTTTTTTTT TATTGTTTGT TGTTTGGTTT TGCTTTTGGT TTCTGTTTGA
  TAATTTCTTT AGTGTTACCG TTTTACCTTT TATATGTAGA TCTGAAGTCC TCAGGATTTG
  ATTTGGGGTG TGGGGTGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135741308	ENSMUSSNP2952883	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320911472	CHEV_3_122122130	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49771266					SNP	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122212861 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	545 bp upstream
Cpgi13768	CpG island 13768	341 bp proximal
Rr397985	regulatory region 397985	369 bp upstream
Rr584325	regulatory region 584325	9 bp distal
Rr584326	regulatory region 584326	129 bp proximal
Rr584327	regulatory region 584327	577 bp proximal
Tssr31494	transcription start site region 31494	527 bp upstream
Tssr31495	transcription start site region 31495	560 bp upstream
Tssr31496	transcription start site region 31496	581 bp upstream
Tssr31497	transcription start site region 31497	654 bp upstream
Tssr31498	transcription start site region 31498	773 bp upstream