rs49769541 SNP Detail

Summary

• ID
  rs49769541
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130486860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TTCGTTTCTT ACTGTTTTTG
  G
  TTTTTTCTCG TTTTTTATTA TCTTA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135897797	ENSMUSSNP6195654	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320966013	CHEV_3_130396129	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49769541					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130486860 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	496 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Rr398016	regulatory region 398016	827 bp upstream
Rr585190	regulatory region 585190	1698 bp distal
Rr585191	regulatory region 585191	1064 bp distal
Rr585192	regulatory region 585192	1654 bp distal
Rr585193	regulatory region 585193	1421 bp distal
Rr585194	regulatory region 585194	915 bp proximal
Rr585195	regulatory region 585195	1002 bp proximal
Rr585196	regulatory region 585196	1530 bp proximal