rs49769219 SNP Detail

Summary

• ID
  rs49769219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131509308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAATTTTC TTTTGATATT
  TACCATTTTT GTTTAAGTCC ACTTAAGAAC TCCCACAGGA TAAAACATTA AATTAGTTTA
  TCTGAGTTCT TTTCTATATA CAAATTATCA GCCTTTCCCA TACTGCAATG TAAATCTAAT
  TGATCCCATT TTCAACAACT CTAAGATTTA GTTACATATT AAATATTATG TAGGTTTTCT
  Y
  CCCCTCTGAG TCTGATATTT TAATCAAAAA GGCTATTTCA TTGAAATTTA GGCATTTGAC
  AATGTTGCCC AACTCAAAAT GTATAGAATA TAGGCAGAAT GGTAGATACT GATTGTCATT
  ATTGATTTCC TGACTGAAGG ACCTCCCATA TTCTCCGTAT TGCCAGCACA TAGAAGTTAT
  TTCTGTGGCA GCCAACTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135905499	ENSMUSSNP4206729	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49769219					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131509308 () rs orientation: forward

Symbol	Name	Function Class
Rr375748	regulatory region 375748	1042 bp downstream
Rr585381	regulatory region 585381	341 bp distal