rs49764540 SNP Detail

Summary

• ID
  rs49764540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56491470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAAAAG CATTGGCTGC
  CCTTTCTGAG GTCCTGAGTT TAAATCCCAG CATCCACACA GTGACTCACA ACCATCTGTA
  ATGGGATCTG ATGCCCTCTT CTGGTGTGTC TGAAGACAGA ATATAATGTA TTCATACATA
  CATACATTAA ATAAATAAAT CTTTTAAAAA ATGACAGTGT TATTTAAATC CCTAGGAAAT
  Y
  GGGATCTTAT CAGAAATACA ATAAAAAATG GTCAGACATA GCAAGAAACA GTAAACACAA
  GACAGCTACT CAAGAAAAAA GAATGACGCT CATAGATGAG GCGGTATATT TAAGAATTTA
  AGGTAGATTT AACATGGAGA TTTACCCTTG GATTTTTTTA TATAATATGC AAACCATAAA
  TATCTAAATT AAAGGATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61809880	NES17750222	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49764540					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809880	NES17750222	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56491470 () rs orientation: forward

Symbol	Name	Function Class
Gm24716	predicted gene, 24716	1129 bp upstream
Rr480711	regulatory region 480711	740 bp distal
Rr480712	regulatory region 480712	727 bp proximal