rs49761140 SNP Detail

Summary

• ID
  rs49761140
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141170893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAGTAAT TAAATACAAA
  CCCACCCTGG CTGCCAGCCC TGACCTTCTT CATGCCCTTC CCATATCACT TCCTCCCTGG
  GAATGGAGCC TGCATTCTCA GTCATGCTAG GCTAGTATTT TACCACTGAC CTACATCTTT
  AGTTCTAATC TAATTTCCAA CCTTCAGGAC ACTGAAGCCT GAGGTTTCCA TACGATAGGT
  K
  GACTGGCCAA TAAATCCCTG GGATTACAGA ATGCACCACT CCTAGATTTT ATTACTATTA
  TTTATTTAAT GTTTACTTAA ATTCTATGAG TATTTTGCCT GCATGCTTGT ATGTATGTCT
  AATTCCTGCA AATAGCAGAA GGCATCAGAT CTCTTGAAAT TGGAGTCACC ATGTGGGTGC
  CGGGAATCGA AGCCAAGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737146	ENSMUSSNP2466215	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49761140					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141170893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15230	CpG island 15230	899 bp proximal
Gm42337	predicted gene, 42337	404 bp downstream
Rr603768	regulatory region 603768	614 bp proximal
Rr603769	regulatory region 603769	1083 bp proximal
Rr603770	regulatory region 603770	1523 bp proximal
Tssr40079	transcription start site region 40079	1075 bp upstream
Tssr44320	transcription start site region 44320	1847 bp downstream
Zbtb17	zinc finger and BTB domain containing 17	1091 bp upstream