rs49760808 SNP Detail

Summary

• ID
  rs49760808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:23630943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATAGAAGG GTTGCCTGCC TCTGTCCTTA GGCACTGTAG
  AGGCACGATA GTCAGACCGA ACTTCCATCC ATTCCAAGGA ACAGAGTGGG ATGGCGGAGG
  R
  CTGAGGCAGC GCTGCGCGTG CCCAAGCCAA TGTTTGCCGA AGCCCTGCCA GCCGTGCTCC
  CCAGTCCAAG CCCCACCGAC ATTCCCCATA GATGACAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148849852	ENSMUSSNP1330535	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49760808					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23630943 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ank1	ankyrin 1, erythroid			Intron
				Noncoding-Transcript-Variant
Gm15816	predicted gene 15816			within coordinates
Mir486	microRNA 486			1628 bp upstream
Mir3107	microRNA 3107			1646 bp downstream
Rr660795	regulatory region 660795			1812 bp distal
Rr660796	regulatory region 660796			1187 bp distal
Rr660797	regulatory region 660797			1482 bp proximal
Tssr76615	transcription start site region 76615			1908 bp downstream
Tssr76616	transcription start site region 76616			1866 bp downstream
Tssr76617	transcription start site region 76617			1851 bp downstream
Tssr76618	transcription start site region 76618			1759 bp downstream
Tssr76619	transcription start site region 76619			886 bp downstream
Tssr76620	transcription start site region 76620			800 bp downstream
Tssr76621	transcription start site region 76621			759 bp downstream