rs49758977 SNP Detail

Summary

• ID
  rs49758977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60703935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTTTCC CCTCAACAAC
  GAGTTTACAG AAAATAGACA ACTGCTATAT TAAAAGCCTG ATAGCCATAT GACCGTATTG
  CTGGTTGTGC TGGCAAACAC CAGCAGGATA CACTCCAATG CTGAAGACTG GAGGGTCATA
  GGAAATACAA CCTTATCTCT CTTAAACAGC AACCAACACA CAAAAGTTAG TGTTTTCTTC
  Y
  ATGAATAAAC CAAAAGTACA CTTTATTTCC TAACAAAAAG CTATATAAAA ACATTTAAAA
  CTGTTTATAA TTTATGCTTA CCCTTACATG AAAATAAATA CAAAAATCAT TAATATTTTT
  TTCAGTTACA TTTATTGAGA CTTTCTGCTC CAGTTACTCA AAGAAATTGT GTTTAACTAG
  TCCCTCATAG AGTTTACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135220961	ENSMUSSNP2694783	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49758977					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60703935 () rs orientation: forward

Symbol	Name	Function Class
Gm37035	predicted gene, 37035	within coordinates
Gm38326	predicted gene, 38326	1786 bp downstream
Rr577459	regulatory region 577459	1312 bp proximal